PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232178.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 233aa    MW: 26141.3 Da    PI: 7.9452
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232178.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.9e-12118206196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsefelvv 94 
                     f+ vlt+ +   + +lv+p +f ++      +s   t+ + +g+ We+ +   ++s++  l  +Wk F+ +n+Lk+gD +vF+ l+  s+++lv+
  XP_008232178.1 118 FDVVLTKTNIEHLYQLVVPGRFSATLP---SCS-IPTVLTFRGKNWEMIY--HGSSSHKRLD-NWKAFAIDNNLKVGDACVFEqLEC-SSTRLVF 204
                     556677777777789999999987663...344.4577889*********..8888877787.********************5444.5555554 PP

                     EE CS
              B3  95 kv 96 
                     +v
  XP_008232178.1 205 RV 206
                     43 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-14115207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-16115207IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-16116210No hitNo description
PfamPF023626.7E-10118205IPR003340B3 DNA binding domain
PROSITE profilePS5086310.433118212IPR003340B3 DNA binding domain
SMARTSM010190.0018118212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MIRVHCWRCV GGRRFSLCFL VFISSVFLSD VAFECCRSSC ASSFFSSHGF SSKGFLGFVK  60
KGTKIEGKRA GVINIGTPTL LINRLMKGEP QMGDLLTSNP VIELEGDEFW PLSWKPFFDV  120
VLTKTNIEHL YQLVVPGRFS ATLPSCSIPT VLTFRGKNWE MIYHGSSSHK RLDNWKAFAI  180
DNNLKVGDAC VFEQLECSST RLVFRVQILR GDIPSEFLDK LDGDNVDAPI VLE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232178.11e-172PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLM5X1G43e-98M5X1G4_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640